PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020867.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 251aa    MW: 27923.2 Da    PI: 9.4978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020867.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.8e-07143171331
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkas 31 
                 + h ++Er+RR+r+ + f  L +++P ++
  Do020867.1 143 QEHVIAERKRRERMQQQFVALATIVPDLT 171
                 5799**********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-6136171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4143171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-6143171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDELNRWPSH PDPEDELPYM YRQQEEHAGM QQHFAERVPE QQQYYAPLPP MAPPPTPNPI  60
SPSHPLHQGS SFPGFGVPAL PSLLLGDMSA KSEPGQPSSS SSIFSFGRQP PSTLNFSGGD  120
WPNGIEAAQQ VPERRSRAHW NTQEHVIAER KRRERMQQQF VALATIVPDL TKPTAGRGHA  180
GSRTTTGVCD FLWRRGAAGL ELGRERVTAR YGRQRNHLRN PRSKSNPIGE GFSTTVELVA  240
NLTMALRGFS T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987096.27e-67PREDICTED: transcription factor bHLH25-like
RefseqXP_008665937.17e-68PREDICTED: transcription factor bHLH18-like
TrEMBLA0A096UIE14e-67A0A096UIE1_MAIZE; Uncharacterized protein
STRINGGRMZM5G896413_P011e-66(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-08bHLH family protein